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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23253533_23261356_R

Intron Information:

Intron Rank:
138678
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23253533 - 23261356
Intron Length:
7824

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTCTTAC|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ACTTTTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
42.1
-0.4
3.1
65.5
30.4
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
47.9
-0
1.8
66.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022124
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023815
23252216 - 23275991
23776