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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23254511_23261356_R

Intron Information:

Intron Rank:
138681
Intron Class:
major
Intron Phase:
Intron Coordinates:
23254511 - 23261356
Intron Length:
6846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTGTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.9
76.9
36
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
64.8
0.46
2
80.35
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022124
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042273
23254461 - 23272892
18432