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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2325528_2328116_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2325528 - 2328116

Intron Length:

2589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGCGG

5'SS Class:

strong_major

3'SS Sequence:

ACGGCTTGCTTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

CTGTCCCCAACT

Flanking Amino Acid:

CLSQVLKEHQIPEFDNLYLD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

60.4

45.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

56.6

0.15

54.1

40.9

Minor 5ss

24.7

-2.9

29.5

43.3

Minor BPS

57.1

0.3

77.05

45.1

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929