Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23267589_23272731_R

Intron Information:

Intron Rank:

138685

Intron Class:

major

Intron Phase:

Intron Coordinates:

23267589 - 23272731

Intron Length:

5143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAATTCC

5'SS Class:

major

3'SS Sequence:

CTCTTTATTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTTTCCTATTA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

32.6

Major BPS

83.9

0.84

73.9

41.3

Major PPT

82.3

0.73

0.7

81.4

Minor 5ss

35.5

-1.6

2.9

41.4

40.3

Minor BPS

57.5

0.23

1.9

75.44

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042273

23254461 - 23272892

18432