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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23278431_23290573_R

Intron Information:

Intron Rank:
141293
Intron Class:
major
Intron Phase:
Intron Coordinates:
23278431 - 23290573
Intron Length:
12143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGTTT
5'SS Class:
major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
75.6
36.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
36.8
-1.5
3.5
47.1
48.3
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023363
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029220
23278306 - 23323997
45692