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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2328350_2329679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2328350 - 2329679

Intron Length:

1330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGAATA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTGCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTTAT

U12 Branch Point Sequence:

TACCCCTTATTC

Flanking Amino Acid:

KMNQQRGRRFRSAKEAEDKI

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.7

85.9

23.8

Major BPS

66.5

0.41

1.1

57.2

40.1

Major PPT

83.5

0.75

0.9

81.3

36.4

Minor 5ss

31.6

-2.1

39.7

45.8

Minor BPS

58.9

0.26

1.6

64.96

40.8

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929