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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2329778_2330118_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2329778 - 2330118

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

TTGTGTTTAACT

Flanking Amino Acid:

ARFDSNCITPGTEFMARLHE

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.8

22.9

Major BPS

73.8

0.59

0.9

26.8

Major PPT

0.9

0.7

88.2

29.1

Minor 5ss

39.6

-1.2

3.1

55.7

48.5

Minor BPS

72.1

0.77

1.7

87.35

38.8

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929