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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2332854_2332954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2332854 - 2332954

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AAAATGTTACTT

Flanking Amino Acid:

YIDYEFSPVKDKIPFEYDIE

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

78.6

29.6

Major BPS

70.8

0.52

70.6

31.6

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

43.2

-0.7

2.7

54.4

36.6

Minor BPS

42.6

-0.4

2.1

56.5

40.1

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929