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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2335631_2336394_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2335631 - 2336394

Intron Length:

764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGGCTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TAATCCATATTT

Flanking Amino Acid:

LEKNEVVTSRTVLEDEPEDD

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

77.9

Major BPS

100

1.24

0.5

100

Major PPT

80.1

0.68

0.9

77.2

37.1

Minor 5ss

34.7

-1.7

3.2

41.8

38.8

Minor BPS

55.9

0.26

1.9

75.38

41.1

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929