Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2337204_2337549_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2337204 - 2337549

Intron Length:

346

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

TGTATTTTCATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TCTTACATCATT

Flanking Amino Acid:

SKDLLPKCYQHLMISQDSPI

Intron Amino Acid Position:

538

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

77.2

0.61

0.8

72.5

37.6

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

48.4

-0

2.2

73.61

43.4

Associated Gene:

Gene:

XRN1

Ensembl Gene ID:

ENSAPLG00000004905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037087

2325453 - 2347668

22216

ENSAPLT00000005097

2325453 - 2349381

23929