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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2338906_2339763_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2338906 - 2339763
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TGTTGTTCAACT
Flanking Amino Acid:
KFPAIERCHTRYKTIPLDAW
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
79.6
0.67
0.8
77.4
36.3
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
59.5
0.38
2
80.88
40.9

Associated Gene:

Gene:
XRN1
Ensembl Gene ID:
ENSAPLG00000004905
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005097
2325453 - 2349381
23929