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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2339885_2339980_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2339885 - 2339980
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGTACT
Flanking Amino Acid:
FPTLKHIKHKFCLRKSGVQV
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.7
0.6
0.9
70.1
40.5
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
53
0.17
2.1
81.89
39

Associated Gene:

Gene:
XRN1
Ensembl Gene ID:
ENSAPLG00000004905
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005097
2325453 - 2349381
23929