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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2340080_2341807_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2340080 - 2341807
Intron Length:
1728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AAAATGCTAACT
Flanking Amino Acid:
IVTDENSKDQTVENVASLIL
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
43.9
-0.3
2.2
61.94
41.3

Associated Gene:

Gene:
XRN1
Ensembl Gene ID:
ENSAPLG00000004905
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005097
2325453 - 2349381
23929