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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23441840_23452562_R

Intron Information:

Intron Rank:
140475
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23441840 - 23452562
Intron Length:
10723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATTTTTA
5'SS Class:
weak_major
3'SS Sequence:
ATCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAA
U12 Branch Point Sequence:
GTAGTAAGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1
72.4
33
Major BPS
53.5
0.09
1
51
33.8
Major PPT
85.7
0.8
0.7
80.6
30.6
Minor 5ss
55.8
0.2
2.3
66.5
38.9
Minor BPS
39.6
-0.8
1.8
46.85
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022955
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041624
23441410 - 23453728
12319