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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23453773_23454266_R

Intron Information:

Intron Rank:
140463
Intron Class:
major
Intron Phase:
Intron Coordinates:
23453773 - 23454266
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
87.9
0.85
0.7
83.3
25.1
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
68.5
0.58
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022955
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018605
23453749 - 23456893
3145