About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23460810_23517081_F

Intron Information:

Intron Rank:
126601
Intron Class:
major
Intron Phase:
Intron Coordinates:
23460810 - 23517081
Intron Length:
56272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
80
0.67
0.9
77.7
34.4
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
82.1
0.99
1.2
87.66
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018231
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045832
23459881 - 23517504
57624