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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23478772_23480930_R

Intron Information:

Intron Rank:
132160
Intron Class:
major
Intron Phase:
Intron Coordinates:
23478772 - 23480930
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAATGC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTGCTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
60.4
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.9
0.92
0.6
86.5
24.5
Minor 5ss
36.6
-1.5
3.3
51
45.6
Minor BPS
60.7
0.32
2
75.09
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018360
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042110
23478395 - 23482841
4447