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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23575498_23580898_R

Intron Information:

Intron Rank:
154610
Intron Class:
major
Intron Phase:
Intron Coordinates:
23575498 - 23580898
Intron Length:
5401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACATTC
5'SS Class:
major
3'SS Sequence:
TGCTTGTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTGCTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
72
34.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71.3
0.48
1.1
64.8
45.7
Minor 5ss
42.6
-0.8
3.1
59
45.7
Minor BPS
52.7
0.16
2.2
76.84
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030753
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018416
23573732 - 23580930
7199