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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2368018_2368651_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2368018 - 2368651
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCCC
5'SS Class:
major
3'SS Sequence:
CTTTTGTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTTTTGTGAACA
Flanking Amino Acid:
AAVRGSSCRKVESLYPHPGW
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
59.9
39.1
Major BPS
80
0.75
1
78.6
31
Major PPT
72.5
0.51
1
69
40.8
Minor 5ss
25.9
-2.8
3.2
33.5
41.9
Minor BPS
53.7
0.11
2.2
71.44
41

Associated Gene:

Gene:
GK5
Ensembl Gene ID:
ENSAPLG00000005240
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005451
2367880 - 2390341
22462