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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2376020_2376391_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2376020 - 2376391
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTATAATA
Flanking Amino Acid:
MSVYPPVKDTSFSFGSADSE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1.1
87.1
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.5
0.57
1.1
76.4
36.6
Minor 5ss
44.9
-0.6
2.6
60
44.4
Minor BPS
66.4
0.51
1.6
75.78
36

Associated Gene:

Gene:
GK5
Ensembl Gene ID:
ENSAPLG00000005240
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005451
2367880 - 2390341
22462