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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2379095_2380756_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2379095 - 2380756
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCAAAATTAATA
Flanking Amino Acid:
GNAIKWAQDINLFTNVDETA
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79
0.65
0.9
72.7
37.5
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
48.9
-0
1.8
59.43
40

Associated Gene:

Gene:
GK5
Ensembl Gene ID:
ENSAPLG00000005240
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005451
2367880 - 2390341
22462