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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2380843_2385328_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2380843 - 2385328
Intron Length:
4486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GCTCACTGAACT
Flanking Amino Acid:
QGVCFVPGFQVSANDPYLCA
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
81.3
0.7
0.8
76.3
31.7
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
56.6
0.28
1.7
72.75
43.2

Associated Gene:

Gene:
GK5
Ensembl Gene ID:
ENSAPLG00000005240
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005451
2367880 - 2390341
22462