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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23818269_23818405_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23818269 - 23818405
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
CCTCATGTCGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ACTGACTTATTT
Flanking Amino Acid:
VGPAAHSQGNILCCHCGVPI
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
60
44.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
58.9
0.2
1.1
58.7
35.7
Minor 5ss
38.2
-1.3
3.4
51.1
45.8
Minor BPS
49.3
0.03
1.9
66.84
44.3

Associated Gene:

Gene:
NMD3
Ensembl Gene ID:
ENSAPLG00000014786
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015453
23818225 - 23828367
10143