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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23818541_23819023_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23818541 - 23819023
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
TTCTTTATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTA
Flanking Amino Acid:
LTLSFCKQCERYLQPPGTWI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.9
0.79
0.7
81
29.6
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
73.6
0.74
1.5
82.84
32.3

Associated Gene:

Gene:
NMD3
Ensembl Gene ID:
ENSAPLG00000014786
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015453
23818225 - 23828367
10143