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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23819761_23820137_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23819761 - 23820137
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
AAATGTACACTT
Flanking Amino Acid:
LKLKVTVQKEVINGAVLQQV
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
36.1
-0.9
2
49.37
38.1

Associated Gene:

Gene:
NMD3
Ensembl Gene ID:
ENSAPLG00000014786
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015453
23818225 - 23828367
10143