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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23820901_23820983_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23820901 - 23820983
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATCAAGG
Flanking Amino Acid:
QNTLRIKEIHDGLDFYYSSK
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
46
-0.4
2.1
53.64
46.7

Associated Gene:

Gene:
NMD3
Ensembl Gene ID:
ENSAPLG00000014786
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015453
23818225 - 23828367
10143