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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23823600_23824505_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23823600 - 23824505
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCTGTTCT
5'SS Class:
major
3'SS Sequence:
GTTCTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CCTGTTCTAATT
Flanking Amino Acid:
HILNPGDLVLGFDLANCNLN
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.6
0.34
1.3
65
41.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.5
0.55
0.9
71.5
38.4
Minor 5ss
43.9
-0.7
2.5
51.4
45
Minor BPS
48.1
-0
1.7
62.82
42.7

Associated Gene:

Gene:
NMD3
Ensembl Gene ID:
ENSAPLG00000014786
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015453
23818225 - 23828367
10143