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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2385433_2386723_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2385433 - 2386723
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
VRAILESVAFRNKQLYDIIV
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
35.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
40.9
-1
3.2
59.5
45
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
GK5
Ensembl Gene ID:
ENSAPLG00000005240
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005451
2367880 - 2390341
22462