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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23913591_23915135_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23913591 - 23915135
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTTGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCCTTCTGAATA
Flanking Amino Acid:
SLVQLCDPPGCKKCASELVV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
62.4
44.7
Major BPS
100
1.24
0.5
100
0
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
38.3
-1.3
3.1
45.9
44.6
Minor BPS
56.7
0.21
1.4
60.09
40.4

Associated Gene:

Gene:
B3GALNT1
Ensembl Gene ID:
ENSAPLG00000017340
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025846
23912540 - 23917326
4787