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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23918362_23919108_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23918362 - 23919108
Intron Length:
747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTGAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTCGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
MKLTGTPDFSAKLLLPLPL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
68.5
38.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.5
0.75
0.7
81
30.7
Minor 5ss
36.1
-1.6
3.4
48.5
47.7
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
ARL14
Ensembl Gene ID:
ENSAPLG00000001749
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001744
23917153 - 23919838
2686