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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23932594_23937316_R

Intron Information:

Intron Rank:
145054
Intron Class:
major
Intron Phase:
Intron Coordinates:
23932594 - 23937316
Intron Length:
4723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
75
37.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
80.6
31.4
Minor 5ss
35.4
-1.7
3.1
49.7
46.5
Minor BPS
67.8
0.54
1.5
75.99
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025440
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040295
23930008 - 23937338
7331