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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23966814_23966852_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23966814 - 23966852
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAATCTGC
5'SS Class:
major
3'SS Sequence:
GCCACTGTGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
CAATCTGCAACG
Flanking Amino Acid:
NNGPLLYLHSCINLRQPPSN
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
55.6
45.7
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
48.7
-0
1.2
46.7
39.5
Minor 5ss
34.1
-1.8
4
47.5
43.4
Minor BPS
44.5
-0.5
2.2
49.35
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018477
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021304
23966729 - 23971461
4733