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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23969216_23971382_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23969216 - 23971382
Intron Length:
2167

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCGGGAACG
5'SS Class:
major
3'SS Sequence:
GTCCAGAGCTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAGAG
U12 Branch Point Sequence:
TAGTCCAGAGCT
Flanking Amino Acid:
APGCAVRMATALGIICTTAA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.2
57.9
40.9
Major BPS
45.1
-0.3
1.5
42.6
40.5
Major PPT
50.9
0.02
1
47
40
Minor 5ss
16.2
-3.9
3.4
14.7
28.1
Minor BPS
49
0
2
71.66
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018477
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021304
23966729 - 23971461
4733