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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23979569_23980335_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23979569 - 23980335
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AATAACTTATTT
Flanking Amino Acid:
NVSIVAFYIYEQTKNAQFII
Intron Amino Acid Position:
1236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84
0.76
0.8
81
35.6
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
51.4
0.12
1.8
69.76
40.8

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632