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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23981430_23982501_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23981430 - 23982501
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
LSAIAEYKKKEELYLNRVAE
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632