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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23983487_23984144_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23983487 - 23984144
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AACTGATTAATA
Flanking Amino Acid:
EVMNERKQAEEALPAVQEEH
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.9
0.56
0.9
69.6
36.6
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
49.1
-0
2
59.97
40.1

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632