About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23985727_23985873_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23985727 - 23985873
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAG
5'SS Class:
major
3'SS Sequence:
GTGTTTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGGGTTCTAACA
Flanking Amino Acid:
TLEKYTASIQNYSEQEVLLK
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
67.3
39.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.4
0.64
0.9
73.9
36.8
Minor 5ss
32.6
-2
2.9
38.7
46.6
Minor BPS
46.5
-0.2
1.7
52.69
39.6

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632