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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23986027_23986217_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23986027 - 23986217
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CACATCTCATTT
Flanking Amino Acid:
AVIIDVSEEEIGRMEAQLQK
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
76.7
0.6
0.9
73.2
36.9
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
43.7
-0.4
1.7
53.23
42.5

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632