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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23986622_23987262_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23986622 - 23987262
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGATGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTGCTTACTT
Flanking Amino Acid:
GVATFIALDKMAVWEKNLKK
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.8
0.69
0.9
78
35.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
60.9
0.42
2
81.92
40.2

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632