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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23987425_23988258_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23987425 - 23988258
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCAATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TCTCCCCTACCA
Flanking Amino Acid:
GNIRGIHGRLGDLGAIDEKY
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
82.5
30.8
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
68.5
0.42
0.9
67.4
37.7
Minor 5ss
46.3
-0.4
2.8
64.2
42.3
Minor BPS
53.1
0.09
2
69.55
42.5

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632