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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23988445_23989021_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23988445 - 23989021
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
LPKAEQELKEKQNRLEKLGK
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.6
0.49
1
71.3
39.5
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632