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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23989642_23990602_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23989642 - 23990602
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
TTTCCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AGAAAGTTAAAA
Flanking Amino Acid:
EKQLQKDKEKVEELKNASSS
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
86.1
0.81
0.6
85.4
21.9
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
42.5
-0.5
2.2
51.16
39.1

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632