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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23992331_23993373_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23992331 - 23993373
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCATCTTTAACT
Flanking Amino Acid:
EILNEQRGEKLNRIKMVEKE
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
80.3
0.68
0.8
73.6
37
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
82.6
1.1
1
88.57
36.5

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632