Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_23993539_24006805_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23993539 - 24006805

Intron Length:

13267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTGTA

5'SS Class:

major

3'SS Sequence:

TTTCTTTTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

AAATATTAAACT

Flanking Amino Acid:

LDHNRFLILQGEVEQIAMMK

Intron Amino Acid Position:

227

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.2

0.59

1.2

73.6

37.4

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

78.6

0.64

78.8

33.5

Minor 5ss

31.2

-2.1

3.3

40.7

45.6

Minor BPS

52.1

0.15

1.8

69.54

Associated Gene:

Gene:

SMC4

Ensembl Gene ID:

ENSAPLG00000006895

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007245

23979395 - 24011026

31632