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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24008904_24009512_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24008904 - 24009512
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTCTACTATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTCCTTCTACT
Flanking Amino Acid:
GEQILGPFHKRFSCIIGPNG
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
74.7
0.56
0.9
70.3
35
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
58.5
0.35
1.9
82.14
38.9

Associated Gene:

Gene:
SMC4
Ensembl Gene ID:
ENSAPLG00000006895
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007245
23979395 - 24011026
31632