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Intron Name: Anas_platyrhynchos_platyrhynchos_9_24016448_24024022_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24016448 - 24024022

Intron Length:

7575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

AACTTTTGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

CTGTATTGAACT

Flanking Amino Acid:

AESFVLTSSDGKFHLISKSG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

75.9

35.2

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

71.2

0.48

69.9

40.6

Minor 5ss

33.7

-1.9

2.9

Minor BPS

57.3

0.31

1.7

73.53

43.4

Associated Gene:

Gene:

IFT80

Ensembl Gene ID:

ENSAPLG00000006299

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045057

24015419 - 24060044

44626

ENSAPLT00000006589

24015419 - 24060684

45266