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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24024134_24026425_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24024134 - 24026425
Intron Length:
2292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
GATAACTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TCTCTGATAACT
Flanking Amino Acid:
WNSEGTALATVGEDGQVKIW
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
74.8
0.62
1
67
39.8
Major PPT
71.8
0.49
1
66.3
44.4
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
48.5
-0
2.3
73.75
43

Associated Gene:

Gene:
IFT80
Ensembl Gene ID:
ENSAPLG00000006299
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045057
24015419 - 24060044
44626
ENSAPLT00000006589
24015419 - 24060684
45266