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Intron Name: Anas_platyrhynchos_platyrhynchos_9_24031629_24032165_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

24031629 - 24032165

Intron Length:

537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCATTA

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTGTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTTAT

U12 Branch Point Sequence:

TTGCATTTATGT

Flanking Amino Acid:

PLQPNVKVLQWKAHDGLILK

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.2

70.4

36.4

Major BPS

76.3

0.65

67.3

39.3

Major PPT

89.9

0.9

0.7

88.4

28.7

Minor 5ss

61.1

0.37

2.4

73.7

42.9

Minor BPS

46.2

-0.2

65.93

44.8

Associated Gene:

Gene:

IFT80

Ensembl Gene ID:

ENSAPLG00000006299

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006589

24015419 - 24060684

45266

ENSAPLT00000045057

24015419 - 24060044

44626