About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24032256_24033080_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24032256 - 24033080
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
LSAGEDCKYKVWDSYGHLLY
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
1
87.2
30.4
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
IFT80
Ensembl Gene ID:
ENSAPLG00000006299
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045057
24015419 - 24060044
44626
ENSAPLT00000006589
24015419 - 24060684
45266