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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_24053114_24053466_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24053114 - 24053466
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATGTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATGTATTT
Flanking Amino Acid:
DAVRLCRFVKATATDEDQTM
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
69.2
0.43
1
66.7
44.1
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
44.9
-0.3
2.3
68.02
43.7

Associated Gene:

Gene:
IFT80
Ensembl Gene ID:
ENSAPLG00000006299
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045057
24015419 - 24060044
44626